RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-5637
Malaria parasiteP. berghei
Genotype
TaggedGene model (rodent): PBANKA_1430900; Gene model (P.falciparum): PF3D7_1215100; Gene product: SUN domain-containing protein, putative (SUN1)
Name tag: GFP
Phenotype Gametocyte/Gamete; Fertilization and ookinete;
Last modified: 2 August 2025, 21:31
  *RMgm-5637
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 40392232
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA 507cl1 (RMgm-7)
Other information parent lineP.berghei ANKA 507cl1 (RMgm-7) is a reference ANKA mutant line which expresses GFP under control of a constitutive promoter. This reference line does not contain a drug-selectable marker (PubMed: PMID: 16242190).
The mutant parasite was generated by
Name PI/ResearcherZeeshan M, Tewari R
Name Group/DepartmentUniversity of Nottingham
Name InstituteSchool of Life Sciences
CityNottingham
CountryUK
Name of the mutant parasite
RMgm numberRMgm-5637
Principal nameSUN1-GFP
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNo expression in asexual blood stages.
Expression in both male and female gametocytes following activation. In activated male gametocytes undergoing mitotic division, SUN1-GFP displayed a dynamic localization around the nuclear DNA (Hoechst-stained), associated with loops and folds forming in the nuclear envelope (NE). In activated female gametocytes within one-minute post-activation, SUN1-GFP was observed to form a half-circle around the nucleus, eventually encompassing the entire nucleus by six to eight minutes. In contrast to SUN1-GFP in male gametocytes, SUN1-GFP in female gametocytes was more uniformly distributed around the nucleus without apparent loops or folds in the NE.
Fertilization and ookineteExpression in both male and female gametocytes following activation. In activated male gametocytes undergoing mitotic division, SUN1-GFP displayed a dynamic localization around the nuclear DNA (Hoechst-stained), associated with loops and folds forming in the nuclear envelope (NE). In activated female gametocytes within one-minute post-activation, SUN1-GFP was observed to form a half-circle around the nucleus, eventually encompassing the entire nucleus by six to eight minutes. In contrast to SUN1-GFP in male gametocytes, SUN1-GFP in female gametocytes was more uniformly distributed around the nucleus without apparent loops or folds in the NE.
In zygotes/ookinetes/oocysts SUN1-GFP had a spherical distribution around nuclear DNA at two hours post-fertilization, but by 24 hours post-fertilization, as the zygote developed into a banana-shaped ookinete, the SUN1-GFP-marked NE became elongated or oval, possibly due to spatial constraints within the cytoplasm.
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses a C-terminal-tagged version of SUN1

Protein (function)
SUN1 is a protein with a carboxy-terminal SUN (Sad1p/UNC-84) domain. SUN domain proteins were present in the first eukaryote and typically span the inner nuclear envelope (NE), where they form part of the LINC (linker of nucleoskeleton and cytoskeleton) complex that anchors the nucleus by connecting the nuclear lamina to the cytosolic cytoskeleton. Apicomplexa lack the nuclear lamins and canonical LINC complex components. SUN1 interacts with a novel Allantoicase-like protein (termed ALLAN). Functional disruption of either SUN1 or ALLAN impairs cytoplasmic basal bodies (BB) segregation, disrupts kinetochore attachment, and results in defective flagellum assembly.
 

Phenotype
No expression in asexual blood stages.
Expression in both male and female gametocytes following activation. In activated male gametocytes undergoing mitotic division, SUN1-GFP displayed a dynamic localization around the nuclear DNA (Hoechst-stained), associated with loops and folds forming in the nuclear envelope (NE). In activated female gametocytes within one-minute post-activation, SUN1-GFP was observed to form a half-circle around the nucleus, eventually encompassing the entire nucleus by six to eight minutes. In contrast to SUN1-GFP in male gametocytes, SUN1-GFP in female gametocytes was more uniformly distributed around the nucleus without apparent loops or folds in the NE.
In zygotes/ookinetes/oocysts SUN1-GFP had a spherical distribution around nuclear DNA at two hours post-fertilization, but by 24 hours post-fertilization, as the zygote developed into a banana-shaped ookinete, the SUN1-GFP-marked NE became elongated or oval, possibly due to spatial constraints within the cytoplasm.

Additional information
Analysis of a mutant lacking expression of SUN1 (RMgm-5636) showed the following:
Normal asexual development/growth. Normal gametocyte production. Reduced male gametogenesis, as shown by a significant decrease in gamete formation (exflagellation). Reduced ookinete formation. Reduced oocyst formation. At day 7, oocysts were comparable in size to wild type, but failed to grow further, and they had degenerated by day 21. Mosquitoes infected with Δsun1 parasites were unable to transmit the parasite to naïve mice.

Evidence is presented that: 
- Transcriptomic analysis of Δsun1 gametocytes shows modulation in lipid metabolism and microtubule organization
- Disruption of SUN1 Perturbs Lipid Homeostasis and Membrane Biogenesis in Gametocytes
- Ultrastructural microscopy reveals defects in spindle formation, Basal Body segregation and nuclear attachment to axonemes in Δsun1 gametocytes
- SUN1 Interactome Reveals Associations with Nuclear Envelope, ER and Chromatin components. PbSUN1 interacted with proteins harbouring a divergent carbohydrate binding domain, such as the allantoicase-like protein ALCC1, referred to as ALLAN (PBANKA_1144200)(see RMgm-5638 and RMgm-5639).
ALLAN is an uncharacterized protein with sequence homology to allantoicase, an enzyme of purine metabolism
- ALLAN is located at nuclear poles (NP) and influences Basal Body/NP segregation in male gametogenesis

Analysis of a mutant expressing a C-terminal GFP-tagged version of SUN1 (RMgm-5637) showed the following:
- No expression in asexual blood stages.
- Expression in both male and female gametocytes following activation
- In activated male gametocytes undergoing mitotic division, SUN1-GFP displayed a dynamic localization around the nuclear DNA (Hoechst-stained), associated with loops and folds forming in the nuclear envelope (NE)
- The parasite line expressing SUN1-GFP (green) was crossed with lines expressing mCherry (red)-tagged kinesin-8B (PBANKA_0202700; PF3D7_0111000), EB1 (PBANKA_0405600; PF3D7_0307300) or NDC80 (PBANKA_1115700; PF3D7_0616200). Results of analysis of these double-tagged parasites indicated suggest that although SUN1-GFP is partially colocalized with spindle poles as indicated by EB1, it shows no overlap with kinetochores (NDC80) or BB/axonemes (kinesin-8B).
- In activated female gametocytes within one-minute post-activation, SUN1-GFP was observed to form a half-circle around the nucleus, eventually encompassing the entire nucleus by six to eight minutes. In contrast to SUN1-GFP in male gametocytes, SUN1-GFP in female gametocytes was more uniformly distributed around the nucleus without apparent loops or folds in the NE
- In zygotes/ookinetes/oocysts SUN1-GFP had a spherical distribution around nuclear DNA at two hours post-fertilization, but by 24 hours post-fertilization, as the zygote developed into a banana-shaped ookinete, the SUN1-GFP-marked NE became elongated or oval, possibly due to spatial constraints within the cytoplasm.

Because the defect in Δsun1 parasites led to a transmission block, we investigated whether the defect was rescued by restoring sun1 into Δsun1 parasites, using the Δnek4 parasite that produces normal male gametocytes but is deficient in production of female gametocytes. We performed a genetic cross of Δsun1 and Δnek4 parasites, which produced some normal-sized oocysts that were able to sporulate, showing a partial rescue of the Δsun1 phenotype. As controls, Δsun1 and Δnek4 parasites alone were examined and no oocysts/sporozoites were detected. These results indicate that a functional sun1 gene is required from a male gamete for subsequent oocyst development.

The SUN1 Interactome Reveals Associations with Nuclear Envelope, ER and Chromatin components. PbSUN1 interacted with proteins harbouring a divergent carbohydrate binding domain, such as the allantoicase-like protein ALCC1, referred to as ALLAN (PBANKA_1144200)(see RMgm-5638 and RMgm-5639).
ALLAN is an uncharacterized protein with sequence homology to allantoicase, an enzyme of purine metabolism. ALLAN is located at nuclear poles (NP) and influences Basal Body/NP segregation in male gametogenesis.

Analysis of a mutant expressing a C-terminal GFP-tagged version of ALLAN (see RMgm-5639) showed the following:
-  During asexual blood stages, ALLAN-GFP exhibited a diffuse nucleoplasmic signal in trophozoites and schizonts with distinct focal points adjacent to dividing DNA, consistent with a role in mitotic regulation. By late schizogony, the ALLAN signal had diminished
- In male and female gametocytes and during zygote to ookinete transformation, ALLAN-GFP showed a spherical distribution around Hoechst-stained nuclear DNA and was enriched to form distinct focal points.
During oocyst development and liver schizogony, ALLAN-GFP also exhibited distinct focal points adjacent to dividing DNA suggesting a role in mitotic regulation, like in asexual blood stages.
- In activated male gametocytes, ALLAN-GFP rapidly localized within a minute post-activation to the NE, forming strong focal points that correlated with spindle poles or MTOCs. This localization persisted as ploidy increased from 1N to 8N in successive rounds of genome replication during male gametogenesis
- The location of ALLAN-GFP showed no overlap with that of kinesin-8B, a BB marker, and that of kinetochore marker NDC80
- Crosses with EB1-mCherry, a spindle marker, revealed an overlap at spindle poles suggesting a role for ALLAN in nuclear spindle pole organization. Thus, the spatial relationship of SUN1 and ALLAN suggests coordinated roles in nuclear architecture and division of labour. SUN1 likely spans the NE, linking nuclear and cytoplasmic compartments, while ALLAN localizes more specifically to nuclear MTOCs.

Analysis of a mutant lacking expression of ALLAN (see RMgm-5638) showed the following:
- Normal asexual development/growth.
- Normal gametocyte production. Slightly reduced male gametogenesis, as shown by a a decrease in gamete formation (exflagellation).
- Reduced ookinete formation.
- Significant reduced oocyst formation, with diminished oocyst size and survival at 14- and 21-days post-infection.
- Δallan parasites were successfully transmitted to mice in bite-back experiments, showing that some viable sporozoites were produced

Other mutants


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1430900
Gene Model P. falciparum ortholog PF3D7_1215100
Gene productSUN domain-containing protein, putative
Gene product: Alternative nameSUN1
Details of the genetic modification
Name of the tagGFP
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/construct(Linear) plasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationTo generate GFP-tagged lines for SUN1, and ALLAN, a region of each gene downstream of the ATG start codon was amplified, ligated to the p277 vector, and transfected as previously described. The p277 vector includes a human DHFR cassette, providing resistance to pyrimethamine.

Gene-deletion targeting vectors for SUN1, and ALLAN were created using the pBS1105 DHFR plasmid. This plasmid contains polylinker sites flanking a Toxoplasma gondii dhfr/ts expression cassette, which provides resistance to pyrimethamine, as previously described previously (Saini et al., 2017). To construct these vectors, PCR primers N1511 and N1512 were used to amplify a 1,1094 bp fragment of the 5' upstream sequence to sun1 from genomic DNA, which was then inserted into the ApaI and HindIII restriction sites upstream of the dhfr/ts cassette in the pBS-DHFR plasmid. A 776 bp fragment from the 3' flanking region of sun1 gene generated with primers N1513 and N1514, was inserted downstream of the dhfr/ts cassette using EcoRI and XbaI restriction sites. The same method was applied for allan amplifying the upstream (1044 bp) and downstream (1034 bp) sequences and inserted to pBS-DHFR plasmid. The linear targeting sequence was released using ApaI/XbaI.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6