RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-5351
Malaria parasiteP. berghei
Genotype
TaggedGene model (rodent): PBANKA_1353800; Gene model (P.falciparum): PF3D7_1340400; Gene product: conserved Plasmodium protein, unknown function (ROVER (roaming’s over))
Name tag: triple-HA
Transgene
Transgene not Plasmodium: GFP
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Phenotype Gametocyte/Gamete; Fertilization and ookinete;
Last modified: 15 September 2023, 18:12
  *RMgm-5351
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 37708854
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA 507cl1 (RMgm-7)
Other information parent lineP.berghei ANKA 507cl1 (RMgm-7) is a reference ANKA mutant line that expresses GFP under control of the constitutive eef1a promoter. This reference line does not contain a drug-selectable marker (PubMed: PMID: 16242190).
The mutant parasite was generated by
Name PI/ResearcherUkegbu CV, Vlachou D, Christophides GK
Name Group/DepartmentDepartment of Life Sciences
Name InstituteImperial College London
CityLondon
CountryUK
Name of the mutant parasite
RMgm numberRMgm-5351
Principal namerover::3xha
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteThe ROVER::3xHA protein was detected only in mature ookinetes as 2 bands: the first at the expected size of ~43 kDa, and the second, more predominant band at ~25 kDa. This may indicate proteolytic cleavage of the protein. In immunofluorescence assays, STONES::3xHA was specifically detected at a distinctive membrane region located on the convex side of the mature ookinete, posterior to the apical structure. This region is critical for ookinete motility and has been termed Ookinete Extrados Site (OES). In non-triton X-100 treated mature ookinetes, no signal at the OES could be detected, suggesting that the N-terminal HA-tagged part of STONES is intracellular, which is consistent with its topology predictions.
Fertilization and ookineteThe ROVER::3xHA protein was detected only in mature ookinetes as 2 bands: the first at the expected size of ~43 kDa, and the second, more predominant band at ~25 kDa. This may indicate proteolytic cleavage of the protein. In immunofluorescence assays, STONES::3xHA was specifically detected at a distinctive membrane region located on the convex side of the mature ookinete, posterior to the apical structure. This region is critical for ookinete motility and has been termed Ookinete Extrados Site (OES). In non-triton X-100 treated mature ookinetes, no signal at the OES could be detected, suggesting that the N-terminal HA-tagged part of STONES is intracellular, which is consistent with its topology predictions.
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses a C-terminal 3xHA tagged version of ROVER and expresses the reporter GFP under control of the constitutive eef1a promoter. 

Protein (function)
ROVER was identified in a genetic screen with barcode sequencing that allowed identifying gametocyte expressed genes required for mosquito-infection. ROVER encodes a 367 amino acid protein with no predicted domains.

Phenotype

The ROVER::3xHA protein was detected only in mature ookinetes as 2 bands: the first at the expected size of ~43 kDa, and the second, more predominant band at ~25 kDa. This may indicate proteolytic cleavage of the protein. In immunofluorescence assays, STONES::3xHA was specifically detected at a distinctive membrane region located on the convex side of the mature ookinete, posterior to the apical structure. This region is critical for ookinete motility and has been termed Ookinete Extrados Site (OES). In non-triton X-100 treated mature ookinetes, no signal at the OES could be detected, suggesting that the N-terminal HA-tagged part of STONES is intracellular, which is consistent with its topology predictions.

Additional information
ROVER was identified in a genetic screen with barcode sequencing that allowed identifying gametocyte expressed genes required for mosquito-infection.

From the paper:
We selected for further analysis, three genes with strong phenotypes, STONES, CRYSP and CRONE, as well as two genes for which the screen revealed no phenotype, ROVER and SPM1; an independent preliminary study had indicated that ROVER may be involved in infection, while SPM1 was used as a control. Integration of the disruption cassettes and gene deletion in the clonal Δsto (RMgm-5345), Δcry (RMgm-5346), Δcro (RMgm-5347), Δrov (RMgm-5348) and Δspm1 (RMgm-5349) parasite lines was confirmed by PCR

We used PlasmoGEM disruption vectors for STONES and CRYSP and conventional disruption vectors for CRONE, ROVER and SPM1 to generate clonal P. berghei mutants in the c507 GFP-expressing wild type (wt) line. 
For all mutant parasites exflagellation events per the number of male gametocytes, was comparable to that of the wt control and ookinete conversion rates, i.e., the ratio of ookinetes to female gametocytes counts were also not significantly different from the control for all the mutants. 
Δcry, Δcro and Δspm1 mutants produced oocysts that were not significantly different in number from wt. A 99% decrease of mean oocyst numbers was observed for Δsto and Δrov mutants, with Δrov showing a maximum of only one oocyst in some midguts. Whilst the STONES phenotype was consistent with that obtained from the screen, the ROVER phenotype was unexpected and could only be justified by re-expression of the gene in the ookinetes and male wt allele rescue of the phenotype in the screen.
We investigated this by crossing Δrov to either the female-donor Δhap2 or the male-donor Δnek4 followed by oocyst counting in A. coluzzii 8 days post infection on coinfected mice. The Δc57 line that harbors a disruption of PIMMS57 was also included in these assays, as the screen also failed to detect this gene that has been previously shown to be important for ookinete-to-oocyst transition. The results confirmed that the oocyst-deficient phenotypes of both genes can be rescued by both the male and female  wt alleles, consistent with the expected limitation of the screen to reveal recessive phenotypes in diploid cells, after the wt allele introduced into the zygote by the microgamete is transcribed. PIMMS57 is known to be specifically expressed in ookinetes, likely by both parental alleles, and the results suggest that the gametocyte-enriched ROVER gene is also expressed in ookinetes and that this expression is important for its function.
These results were also reflected in the salivary gland sporozoite counts for Δsto, Δcro  and Δrov,which ranged from very few to none. Importantly, and consistent with the results of the screen, none of the thousands of Δcry oocyst sporozoites were capable of infecting the salivary glands, again corroborating the results of the screen. A statistically significant 57% reduction in sporozoite counts was detected for Δspm1 suggesting that the effect seen in midgut sporozoites may also be true. 
The ability of mutant parasites to transmit to the mouse host and infect RBCs was assessed using mosquito-to-mouse (C57/BL6 strain) bite-back infections 21 days post infection. As expected, no transmission and development of mouse parasitemia was detected for any of the Δsto, Δcro, Δcry and Δrov mutants, leading us to conclude that loss-of-function of the respective proteins leads to malaria transmission blockade. However, the reduction seen in Δspm1 salivary gland sporozoites did not bear any impact on the capacity of mutant sporozoites to infect the mouse host, suggesting that  SPM1 is dispensable for sporozoite development and transmission.

The ookinete to oocyst defective phenotypes of the Δsto and Δrov parasites were further investigated in midgut invasion assays using infections of A. coluzzii silenced for CTL4. CTL4 is a key hemolymph regulator of melanization, and its silencing leads to readily melanized P. berghei ookinetes that have succeeded in invading the midgut epithelium and reached the sub-epithelial space. The results showed that both Δsto and Δrov ookinetes displayed a great defect in midgut invasion as the number of melanized ookinetes were significantly reduced compared to wt controls. Defective midgut invasion can be due to the inability of ookinetes to move, and we assessed this by measuring the forward speed of ookinetes on matrigel. The results confirmed that both Δsto and Δrov mutants exhibit strong motility defects which likely cause their decreased ability to traverse the midgut epithelium and form oocysts and sporozoites. To further examine this, Δsto and Δrov ookinetes were injected directly into the hemocoel to assess if the oocyst and sporozoite defective phenotypes could be rescued. Indeed, it has been previously shown that mosquito transmission of P. berghei mutants with ookinete motility defects can be rescued if midgut invasion is bypassed. The result confirmed that this was the case for both Δsto and Δrov, as both the salivary gland sporozoite numbers and the ability of mutants for mouse transmission through bite-back were restored.

The endogenous STONES, ROVER, CRYSP and CRONE genes were tagged with C-terminal 3xHA tag via double crossover homologous recombination in the c507 line, and the resulting transgenic lines were designated stones::3xha (RMgm-5350), rover::3xha (RMgm-5351), crysp::3xha (RMgm-5352) and crone::3xha (RMgm-5353), respectively We first analyzed STONES and ROVER, of which the disruption leads to defective ookinete phenotypes. The STONES::3xHA protein could not be detected at the predicted size of ~125 kDa in Triton X-100 soluble extracts of blood stages, gametocytes or mature ookinetes. Instead, a band size of ~16 kDa was detected predominantly in mature ookinetes and less in blood stages and gametocytes. However, in Triton X-100 insoluble extracts, a band of ~80 kDa was specifically detected  in mature ookinetes, with traces of it also in gametocytes. As the full length protein was never detected in any of the extracts, these results suggest that STONES undergoes proteolytic processing, and that its C-terminal ~80kDa fragment is embedded within the membrane owing to the multiple transmembrane domains. The ROVER::3xHA protein was detected only in mature ookinetes as 2 bands: the first at the expected size of ~43 kDa, and the second, more predominant band at ~25 kDa. This may indicate proteolytic cleavage of the protein. In immunofluorescence assays, STONES::3xHA was specifically detected at a distinctive membrane region located on the convex side of the mature ookinete, posterior to the apical structure. This region is critical for ookinete motility and has been termed Ookinete Extrados Site (OES). In non- riton X-100 treated mature ookinetes, no signal at the OES could be detected, suggesting that the N-terminal HA-tagged part of STONES is intracellular, which is consistent with its topology predictions. ROVER::3xHA was localized in discrete cytoplasmic spots of mature ookinetes, resembling exocytic vesicles, commonly but not always positioned toward the apical end and in proximity to the cell membrane.

Western blot analyses using an anti-HA antibody detected a ~33 kDa CRYSP::3XHA protein in extracts from purified in vitro cultured crysp::3xha ookinetes and, to a much lower levels, from gametocytes, both prior to and after induction of gametogenesis. Similarly, the ~33 kDa CRONE::3xHA protein was detected in ookinete and, less so, gametocyte extracts of the crone::3xha line. We examined the cellular localization of the two proteins in immunofluorescence assays of gametocytes and ookinetes. In both cases, a clear and distinct spot pattern that always colocalized with the hemozoin (visible in bright field) was detected in the ookinete. This pattern is the hallmark of crystalloid localization in P. berghei. Multiple ookinete observations revealed that the number of spots varied from 1 to 3, which were always in association with the hemozoin containing vesicles. The two proteins were henceforth named CRONE for “crystalloid oocyst not evolving” and CRYSP for “crystalloid needed for sporozoites”. In the crone::3xha line, a vesicle-like albeit less prominent staining pattern was also detected in the female gametocytes, consistent with the high CRONE protein abundance in gametocyte extracts. Crystalloids are organelles known to be specific to ookinetes and young oocysts, thought to form soon after fertilization through active assembly of endoplasmic reticulum-derived vesicles. Some of the known crystalloid proteins are also synthesized in the gametocytes. Therefore, one can speculate that the CRONE::3xHA-stained gametocyte vesicles are crystalloid precursor subunits. Whilst this may be true, the expression of CRONE in gametocytes could be due to the CRONE::3xHA expression design that used the P. berghei dihydrofolate reductase (DHFR) 3′ untranslated region (UTR). Cis-acting elements in the 5′ UTR or 3′ UTR of DOZI- regulated genes have been shown to be important for translational repression. Indeed, a previous study that expressed a GFP-tagged version of CRONE using the 3′ UTR of P28 that is also translationally repressed by DOZI found that GFP is restricted to the ookinete crystalloid. To examine this, we raised rabbit polyclonal antibodies against a codon-optimized fragment of CRONE (amino acids 24-235) expressed in Escherichia coli cells. Using these antibodies in immunofluorescence assays, we detected a clear ookinete crystalloid signal, but this signal was absent from gametocytes. This indicated that the gametocyte signal detected in the crone::3xha line is likely due to leaky DOZI post-transcriptional repression

Other mutants


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1353800
Gene Model P. falciparum ortholog PF3D7_1340400
Gene productconserved Plasmodium protein, unknown function
Gene product: Alternative nameROVER (roaming’s over)
Details of the genetic modification
Name of the tagtriple-HA
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationFor the C-terminal 3xHA tagging of STONES, CRYSP and CRONE in the c507 line, we used the PlasmoGEM vectors PbGEM012712, PbGEM058364 and PbGEM089977, respectively. The C-terminal 3xHA tagging of ROVER in the c507 line was generated by Gibson assembly. Firstly, a 694 bp 5′ homology arm ApaI fragment corresponding to the most 3′ region of the CDS and the 3XHA sequence was amplified using the primer pairs P30/P31. The 460bp DHFR 3′UTR SacII fragment was amplified from the pL00018 vector (MRA-787, MR4) using the primers P32/P33. An overlap PCR using both fragments was set up to generate the Apa/SacII ROVER::3XHA::DHFR 3′UTR. A 560 bp Xho/XmaI 3′ homology arm region corresponding to the 3′UTR of the gene was amplified using the primer pairs P34/P35. The ROVER fragments were cloned flanking the hDHFR/yFCU selection cassette into plasmid pL0035.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitegfp (FACS)
Promoter of the selectable markereef1a
Selection (positive) procedureFACS (flowsorting)
Selection (negative) procedureNo
Additional remarks genetic modificationThe GFP gene (1 copy) has been inserted into the 230p locus (PBANKA_030600) by double cross-over integration.
Additional remarks selection procedureThis reporter mutant expressing GFP does not contain a drug-selectable marker. This mutant has been selected by FACS sorting after transfection based on GFP fluorescence.
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4