SummaryRMgm-5611
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Successful modification | The parasite was generated by the genetic modification |
The mutant contains the following genetic modification(s) | Gene disruption |
Reference (PubMed-PMID number) |
Reference 1 (PMID number) : 39341498 |
MR4 number | |
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Parent parasite used to introduce the genetic modification | |
Rodent Malaria Parasite | P. berghei |
Parent strain/line | P. berghei ANKA |
Name parent line/clone | Not applicable |
Other information parent line | |
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The mutant parasite was generated by | |
Name PI/Researcher | Vaishalli PM, Nagaraj VA |
Name Group/Department | Infectious Disease Biology |
Name Institute | Institute of Life Sciences |
City | Bhubaneswar, Odisha |
Country | India |
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Name of the mutant parasite | |
RMgm number | RMgm-5611 |
Principal name | PbHMGB1KO |
Alternative name | |
Standardized name | |
Is the mutant parasite cloned after genetic modification | Yes |
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Phenotype | |
Asexual blood stage | Growth analysis performed for the asexual stages in Balb/c mice infected with 105 PbHMGB1KO parasitized RBCs indicated a delay of ~3 days in comparison with PbWT parasite growth. Mice infected with PbHMGB1KO parasites displayed a subsequent clearance when the blood parasitemia reached around 15-30%. While all the mice infected with PbWT parasites succumbed to anemia within day 19 post-infection, PbHMGB1KO-infected mice were completely protected against disease and complete clearance of blood parasitemia and the absence of recrudescence infections. Eevidence is presented for splenic clearance of PbHMGB1KO parasites and that PbHMGB1 regulates pir expression. |
Gametocyte/Gamete | Not tested |
Fertilization and ookinete | Not tested |
Oocyst | Not tested |
Sporozoite | Not tested |
Liver stage | Not tested |
Additional remarks phenotype | Mutant/mutation |
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Details of the target gene | |||||||||||||||||||||||||
Gene Model of Rodent Parasite | PBANKA_0601900 | ||||||||||||||||||||||||
Gene Model P. falciparum ortholog | PF3D7_1202900 | ||||||||||||||||||||||||
Gene product | high mobility group protein B1 | ||||||||||||||||||||||||
Gene product: Alternative name | HMGB1 | ||||||||||||||||||||||||
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Details of the genetic modification | |||||||||||||||||||||||||
Inducable system used | No | ||||||||||||||||||||||||
Additional remarks inducable system | |||||||||||||||||||||||||
Type of plasmid/construct used | (Linear) plasmid double cross-over | ||||||||||||||||||||||||
PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||||||||
Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||||||||
Plasmid/construct map | |||||||||||||||||||||||||
Plasmid/construct sequence | |||||||||||||||||||||||||
Restriction sites to linearize plasmid | |||||||||||||||||||||||||
Partial or complete disruption of the gene | Complete | ||||||||||||||||||||||||
Additional remarks partial/complete disruption | |||||||||||||||||||||||||
Selectable marker used to select the mutant parasite | hdhfr | ||||||||||||||||||||||||
Promoter of the selectable marker | eef1a | ||||||||||||||||||||||||
Selection (positive) procedure | pyrimethamine | ||||||||||||||||||||||||
Selection (negative) procedure | No | ||||||||||||||||||||||||
Additional remarks genetic modification | To generate PbHMGB1KO parasites, 5’UTR region of PbHMGB1 was amplified from PbWT genomic DNA using the following forward and reverse primers: 5’ GCCAGGGCCCCGGTTTATTTTGGCAAAATAAAAGGG-3’ and 5’ GCCAGATCTAGAAAACCTTTTTTTTTAAAATATAAAGGACAGG-3’. ApaI and XbaI restriction sites are underlined. Similarly, 3’UTR region of PbHMGB1 was amplified using the following forward and reverse primers: 5’ GCCAGGTACCGGAAAGTATATATAATAAAATATTATATGAATGTG-3’ and 5’ GCCCGCGGCCGCGAACGTGCTAAAATAACACCA-3’. KpnI and NotI restriction sites are underlined. The resultant 5’UTR and 3’UTR fragments were digested with respective restriction enzymes and cloned into pL0006 plasmid on either side flanking human DHFR selection cassette. The recombinant plasmid was then digested with ApaI and NotI, and the released fragment was transfected into PbWT schizonts. To generate PbHMGB1KOLuc parasites, a similar set of primers were used except for the changes in the restriction sites. For 5’UTR forward and reverse primers, SacII and NotI restriction sites were used. For 3’UTR forward and reverse primers, XhoI and KpnI restriction sites were used. The digested 5’UTR and 3’UTR fragments were cloned into GOMO-GFP-Luc plasmid on either side flanking GFP-Luc expressing cassette and a drug selection cassette expressing hDHFR fused with yFCU (yeast cytosine deaminase-uridyl phosphoribosyl transferase) and m-Cherry. After digesting the recombinant plasmid with SacII and KpnI, transfection was carried out as described for PbHMGB1KO parasites. To generate PbWTHMGB1-GFP transgenic parasites, a 736 bp upstream promoter sequence along with the entire coding sequence of PbHMGB1 was amplified using Phusion DNA polymerase with the following forward and reverse GCCACCGCGGCGGTTTATTTTGGCAAAATTAAAAGGG-3’ primers: and 5’- 5’ GCAAGGATCCTCCAGCACCAGCAGCAGCACCTTTCATTTTACTTTTGGCATATT CCAT-3’. SacII and BamHI restriction sites are underlined and the 21 bp linker sequence included in the reverse primer is highlighted in bold. The amplified fragment of 1076 bp was cloned in-frame upstream to the GFP sequence of pL0031 plasmid. The cloned fragment with in-frame GFP was then amplified with the forward primer and a GFP-specific reverse primer: 5’-GCAAGAATTCTTATTTGTATAGTTCATCCATGCCATG-3’. EcoRI restriction site in the GFP-specific reverse primer is underlined. The resultant fragment of 1795 bp was cloned into the GOMO-GFP-luciferase plasmid by replacing the GFP-luciferase sequence. To perform double-crossover recombination, a 3’UTR sequence of PbHMGB1 (656 bp) was amplified using the forward and reverse primers: 5’ GCCACTCGAGGGAAAGTATATATAATAAAATATTATATGAATGTG-3’ and 5’ GCCCGGTACCGAACGTGCTAAAATAACACCA-3’, and cloned into the afore-mentioned plasmid. XhoI and KpnI restriction sites are underlined. The recombinant plasmid was then digested with SacII and KpnI restriction sites and the released fragment was transfected into PbWT schizonts | ||||||||||||||||||||||||
Additional remarks selection procedure | |||||||||||||||||||||||||
Primer information: Primers used for amplification of the target sequences
![]() Primer information: Primers used for amplification of the target sequences
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