RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-5260
Malaria parasiteP. yoelii
Genotype
TaggedGene model (rodent): PY17X_0921400; Gene model (P.falciparum): PF3D7_1129000; Gene product: spermidine synthase (SpdS)
Name tag: EGFP
Phenotype Asexual bloodstage; Sporozoite;
Last modified: 7 November 2022, 15:05
  *RMgm-5260
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 36162149
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. yoelii
Parent strain/lineP. y. yoelii 17XNL
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherKamil M, Aly ASI
Name Group/DepartmentAly Lab, Beykoz Institute of Life Sciences and Biotechnology
Name InstituteBezmialem Vakif University
CityIstanbul
CountryTurkey
Name of the mutant parasite
RMgm numberRMgm-5260
Principal namePySpdS-eGFP
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageTo find out the cellular localization of SpdS in mouse and mosquito stages of the parasites, blood-stages and sporozoites of the eGFP tagged PySpdS parasites were co-stained with the mitochondrial staining dye Mito-tracker Red. The eGFP signals of PySpdS were clearly co-localized with the mitochondrial marker dye Mito-tracker Red at both blood-stages and sporozoites.
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteTo find out the cellular localization of SpdS in mouse and mosquito stages of the parasites, blood-stages and sporozoites of the eGFP tagged PySpdS parasites were co-stained with the mitochondrial staining dye Mito-tracker Red. The eGFP signals of PySpdS were clearly co-localized with the mitochondrial marker dye Mito-tracker Red at both blood-stages and sporozoites.
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses a C-terminal eGFP-tagged version of SpdS

Protein (function)
Positively-charged polyamines are essential molecules for the replication of eukaryotic cells. Polyamines are essential, positively charged, ubiquitous aliphatic molecules with two or more amino groups, which include Putrescine, Spermidine and Spermine. Polyamines are essential, positively charged, ubiquitous aliphatic molecules with two or more amino groups, which include Putrescine, Spermidine and Spermine. Known parasitic protozoa that have the complete central polyamine pathway (AdoMetDC, ODC, and SpdS) are Plasmodium spp., Leishmania spp., and Trypanosoma brucei. However, in these species, due to the absence of Spermine Synthase, Spermidine Synthase most probably plays a promiscuous role and is responsible for the synthesis of both Spermidine and Spermine.

Phenotype
Several attempts to generate SpdS-deficient parasites were not successful (see RMgm-5259), despite the daily supplementation of Spermidine and Spermine to mice carrying the transfected parasites. To rule out any technical shortcoming or genetic accessibility in the inability to delete the PySpdS gene, we used a knock-in/knockout gene targeting strategy. In this strategy, the knock-in construct replaces the whole coding sequence or part of the coding sequence with an identical copy followed by eGFP sequence, and then followed by a constitutive 3' UTR. The knockout construct shares the same right homology arm as the knock-in construct, however, the left homology arm of the knockout construct was designed to delete or replace the gene with its own copy. The PCR genotyping confirms only the integration of the knock-in construct in the chromosomal locus (PySpdS-eGFP), however, the knockout construct for PySpdS did not integrate into the genome.

To find out the cellular localization of SpdS in mouse and mosquito stages of the parasites, blood-stages and sporozoites of the eGFP tagged PySpdS parasites were co-stained with the mitochondrial staining dye Mito-tracker Red. The eGFP signals of PySpdS were clearly co-localized with the mitochondrial marker dye Mito-tracker Red at both blood-stages and sporozoites. These results confirm the mitochondrial localization of the malaria parasite SpdS.

Additional information

Other mutants


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PY17X_0921400
Gene Model P. falciparum ortholog PF3D7_1129000
Gene productspermidine synthase
Gene product: Alternative nameSpdS
Details of the genetic modification
Name of the tagEGFP
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/construct(Linear) PCR construct double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markerunknown
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe deletion or knock-in/tagging of PySpdS gene was accomplished by double-crossover homologous recombination.
For the Knock-out construct, the PCR amplified sequences were inserted into AA20 transfection plasmid between SacII-BamHI and HindIII-KpnI restriction enzyme sites for the 3'UTR and 5'UTR sequences, respectively. For the knock-in/tagging construct, the 5'UTR region cloned into SacII-BamHI in the knockout construct was replaced by the coding sequence of SpdS which was PCR amplified by primer pair and inserted into plasmid between SacII-EcoRI. The fragments cloned for SpdS were designed not to interfere with the coding sequences of any upstream or downstream neighboring genes and the makeup of those fragments was checked by sequencing to ensure that any unknown promoter or termination signals for the neighboring genes were not altered. Both knockout and knock-in vectors were linearized with SacII-KpnI before transfection to P. yoelii 17X-NL. Pilot experiments (that were repeated twice) only with the knockout construct to target SpdS for deletion with the supplementation of varying concentrations (from 50 mg/kg and up to 100 mg/kg per mouse per day; starting one day before transfection) of Spermidine and Spermine into mice receiving transfected parasites. Positive drug selection of resistant parasites with pyrimethamine and cloning of transfected parasites were done as described.
The first several attempts to generate SpdS-deficient parasites were not successful, despite the daily supplementation of Spermidine and Spermine to mice carrying the transfected parasites. To rule out any technical shortcoming or genetic accessibility in the inability to delete the PySpdS gene, we used a knock-in/knockout gene targeting strategy. In this strategy, the knock-in construct replaces the whole coding sequence or part of the coding sequence with an identical copy followed by eGFP sequence, and then followed by a constitutive 3' UTR. The knockout construct shares the same right homology arm as the knock-in construct, however, the left homology arm of the knockout construct was designed to delete or replace the gene with its own copy. The PCR genotyping confirms only the integration of the knock-in construct in the chromosomal locus (PySpdS-eGFP), however, the knockout construct for PySpdS did not integrate into the genome.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6