RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4478
Malaria parasiteP. berghei
Genotype
MutatedGene model (rodent): PBANKA_1459300; Gene model (P.falciparum): PF3D7_1246200; Gene product: actin I (ACT1; actin1)
Details mutation: wild type actin 1 under control 3'-UTR dhfs and yfcu::hdhfr in locus
PhenotypeNo phenotype has been described
Last modified: 19 September 2022, 14:05
  *RMgm-4478
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene mutation
Reference (PubMed-PMID number) Reference 1 (PMID number) : 30011270
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherDouglas RG, Frischknecht F
Name Group/DepartmentIntegrative Parasitology, Center for Infectious Diseases
Name InstituteHeidelberg University Medical School
CityHeidelberg
CountryGermany
Name of the mutant parasite
RMgm numberRMgm-4478
Principal nameActin-1 recipient line
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageNot different from wild type
Additional remarks phenotype

Mutant/mutation
The mutant contains a modified/mutated actin-1 gene locus. It contains the wild type actin 1 gene under control of the actin 1 5'-UTR whereas the 3'-UTR is from the dhfs gene. In addition the yfcu::hdfr selection cassette is located in the 3'-UTR region.

This mutant is used as a 'actin-1' recipient line for introduction of mutated forms of actin-1. Constructs to integrate mutated forms of actin 1 integrate by double homologous integration at the 5'- and 3'-UTR regions of actin-1 thereby replacing the wild type copy of actin 1 and the yfcu::hdfr selection cassette. These mutants are selected by negative selection using 5-FC

Protein (function)
Actin, a cytoskeletal protein, has many diverse functions in eukaryotic cells ranging from roles in cell motility, cell division, vesicle trafficking to functions in cell signaling and regulation of transcription. A critical property of actin is its ability to form filamentous polymers (F-actin), and a plethora of proteins are involved in the highly dynamic regulation of F-actin formation . Actins are highly conserved proteins that often exist in multiple isoforms in the eukaryotic cell and their expression is regulated both spatially and temporally during development. Cell motility is essential for protozoan and metazoan organisms and typically relies on the dynamic turnover of actin filaments. In metazoans, monomeric actin polymerises into usually long and stable filaments, while some protozoans form only short and highly dynamic actin filaments. These different dynamics are partly due to the different sets of actin regulatory proteins and partly due to the sequence of actin itself.

The actin monomer has a highly conserved structure that consists of four subdomains and a central nucleotide (adenosine triphosphate [ATP], adenosine diphosphate with inorganic phosphate [ADP + Pi], or adenosine diphosphate alone [ADP]) binding cleft. Actin possesses the ability to self-assemble from monomers (G-actin) to form filaments (F-actin), which in turn can form higher order filamentous structures. Particular regions in the actin subdomains, such as the hydrophobic plug (H-plug) of subdomain 3 and the highly flexible DNAse I-binding loop (D-loop) of subdomain 2, as well as the nucleotide state, have been implicated as major contributors to the formation and stability of filaments

Plasmodium actin only forms short filaments of approximately 100 nm in length, has a noncanonical filament structure that is dynamically unstable, displays slow polymerisation yet rapid depolymerisation rates, and is regulated by a highly reduced set of predicted actin binding proteins (ABPs)(compared to actins of other/higher eukaryotes). Such altered properties are crucial for intracellular parasite growth and efficient parasite motility.

Phenotype
This mutant is used as a 'actin-1' recipient line for introduction of mutated forms of actin-1. Constructs to integrate mutated forms of actin 1 integrate by double homologous integration at the 5'- and 3'-UTR regions of actin-1 thereby replacing the wild type copy of actin 1 and the yfcu::hdfr selection cassette. These mutants are selected by negative selection using 5-FC

Additional information
Using this 'actin-1 recipient line' a number of parasite mutants have been generated that express mutated forms of actin-1. See the paper for additional mutants expressing mutated forms of actin-1

Analyses of these mutant provided evidence for: 

'modification of most subunit–subunit interaction sites of actin-1 was lethal, whereas changes in actin subdomains 1 and 4 reduced efficient sporozoite motility (and hence mosquito organ penetration). The strong penetration defects could be rescued by over-expression of the actin filament regulator coronin. Through these comparative approaches we identified an essential and common contributor, subdomain 3, which drives the differential dynamic behaviour of two highly divergent eukaryotic actins in motile cells.'

Other mutants
See the paper for additional mutants expressing mutated forms of actin-1


  Mutated: Mutant parasite with a mutated gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1459300
Gene Model P. falciparum ortholog PF3D7_1246200
Gene productactin I
Gene product: Alternative nameACT1; actin1
Details of the genetic modification
Short description of the mutationwild type actin 1 under control 3'-UTR dhfs and yfcu::hdhfr in locus
Inducable system usedNo
Short description of the conditional mutagenesisNot available
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationFor the generation of a recipient line, the endogenous actin 1 gene containing silent restriction sites to facilitate subdomain exchanges were ordered from GeneArt (Invitrogen Corp) and cloned into the Pb238 vector with BamHI and XbaI restriction sites. The actin 5′ untranslated region (UTR) was amplified using primers 1 and 2 and cloned into the vector using restriction enzymes SalI and XbaI. The flanking actin 3′ UTR was amplified using primers 3 and 4 and cloned into the transfection vector via AvrII and KpnI restriction sites. The 3′ UTR of dihydrofolate synthase (dhfs) was cloned from another vector [87] into the downstream region of the actin ORF using BamHI and EcoRV restriction enzymes. Finally the positive-negative selection cassette hdhfr-yfcu (standing for human dihydrofolate reductase, yeast cytosine deaminase and uridyl phosphoribosyl transferase fusion enzyme)replaced the original selection cassette using primers 5 and 6 and restriction enzymes EcoRV and AvrII. Linearisation of the construct was achieved through SalI and PmeI digestion, followed by DNA isolation using ethanol precipitation. Transfections were then performed as described previously and positively selected using pyrimethamine (0.07 mg/mL) to yield a recipient line.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6