RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4455
Malaria parasiteP. berghei
Genotype
Transgene
Transgene not Plasmodium: blasticidin S deaminase (bsd)
Promoter: Gene model: PBANKA_0711900; Gene model (P.falciparum): PF3D7_0818900; Gene product: heat shock protein 70 (HSP70)
3'UTR: Gene model: PBANKA_0711900; Gene product: heat shock protein 70 (HSP70)
Insertion locus: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Phenotype Asexual bloodstage;
Last modified: 6 June 2018, 17:29
  *RMgm-4455
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 29774536
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone RMgm-166
Other information parent lineThis mutant expresses GFP under the 5'- and 3'-regulatory sequences of HSP70
The mutant parasite was generated by
Name PI/ResearcherSoga A, Fukumoto S
Name Group/DepartmentNational Research Center for Protozoan Diseases
Name InstituteObihiro University of Agriculture and Veterinary Medicine
CityInada-cho, Obihiro, Hokkaido
CountryJapan
Name of the mutant parasite
RMgm numberRMgm-4455
Principal nameHSP70-pac
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageMutant blood stages have decreased sensitivity to blasticidin compared to wild type blood stages (see additional information)
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses blasticidin S deaminase (bsd) under control of the 5'- and 3'-regulatory sequences of HSP70

Protein (function)
The blasticidin S deaminase (bsd) gene is isolated from Aspergillus terreus; it confers blasticidin S (blasticidin) resistance and is widely used for genetic manipulation of eukaryotic cells.
As blasticidin is toxic to rodents and thus cannot be used for selection of P. berghei in vivo, a pac-puromycin system was developed based on a short-term in vitro culture method

Phenotype
Mutant blood stages have decreased sensitivity to blasticidin compared to wild type blood stages (see additional information)

Additional information
We analyzed the IC50 values for blasticidin of wild type parasites (WT), pyrimethamine resistant pbdhfr-ts marker integrated parasites (PBDHFR), and pXL/hdhfr-bsd-egfp transfected parasites that were selected by pyrimethamine (BSD). The IC50 values were 29.87 ± 12.55 μg ml-1 for WT, 27.13 ± 8.47 μg ml-1 for PBDHFR, and 159.15 ± 103.54 μg ml-1 for BSD. The IC50 value of BSD tended to be increased, as compared with that of WT (p=0.0684) and PBDHFR (p=0.0637). BSD showed significantly decreased susceptibility to blasticidin at the concentrations above the IC70 value compared with WT and PBDHFR (p < 0.05).
Drug sensitivity test described above confirmed that the optimum concentration of blasticidin was 500 μg ml-1 (approximately IC70 value of BSD and 5-fold IC90 value of PBDHFR). The in vitro selection procedure for the pXL/hdhfr-bsd-egfp transfected parasite was performed three times with the 500 μg ml-1 concentration of blasticidin, and the egfp-expressing mutant ratio was monitored after each selection. The ratio was 3.29 ± 1.57, 92.33 ± 1.97, and 94.64 ± 1.98 (Mean ± S.D.) % after each selection, respectively. It took 1-2 days from transfection to 1st selection (parasitemia 1.89 ± 1.53%), 6-7 days from 1st to 2nd selection (parasitemia 1.46 ± 0.23%), and 5 days (parasitemia 0.98 ± 0.51%) from 2nd to 3rd selection.
Two clones were isolated from the mutant parasites population by in vivo limiting dilution method to confirm that bsd was integrated into the genome. Southern blot analysis confirmed that bsd was integrated into the genome.

We constructed a targeting vector that contained a bsd expression cassette which replaced the gfp expression cassette of the GFP-expressing mutant (PbDHFR-GFP) through double crossover homologous recombination. The targeting vector was transfected to PbDHFR-GFP, and the gfp negative mutant ratio was monitored after each in vitro selection. The ratio was 4.74 ± 0.99, 6.88 ± 0.69, and 98.57 ± 2.35 (Mean ± S.D.) % after each selection, respectively. It took 2-3 days from transfection to 1st selection (parasitemia 1.09 ± 0.92%), and 5-6 days from 1st to 2nd selection (parasitemia 1.80 ± 0.86%). Two clones were isolated and Southern blot analysis confirmed that bsd was integrated into the genome. A typical transfection line was also analyzed using flow cytometry. More than 99% of the parasites did not express GFP after the second selection. Therefore, bsd can be used for gene targeting.

In conclusion: Blasticidin S deaminase (bsd) can be used as  a (additional) selectable marker for genetic modification of P. berghei
However, to be able to use bsd as a (additional) selectable marker for genetic modification of P. berghei multiple rounds of in vitro selection and in vivo (in mice) propagation are required to select for the desired mutants

Other mutants


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameblasticidin S deaminase (bsd)
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasiteblasticidin S deaminase (bsd)
Promoter of the selectable markerhsp70
Selection (positive) procedureblasticydin in vitro
Selection (negative) procedureNo
Additional remarks genetic modificationElements of the pXL/hdhfr-bsd-egfp plasmid were sequentially ligated into a pXL-BacII-DHFR plasmid backbone. Firstly, the hdhfr expression cassette was excised from pXL-BacII-DHFR, namely pXL-BacII-DHFR (-). Next, hdhfr was cloned into pXL-BacII-DHFR (-) under control of the P. berghei elongation factor 1 alpha (ef-1α) promoter and the pbdhfr-ts terminator. Then, egfp was excised from the pCX-EGFP Vector under control of the P. berghei hsp70 promoter and terminator. This was cloned into the plasmid pXL-BacII-DHFR (-) that also contained the hdhfr expression cassette. The bsd gene was then excised using pCMV/Bsd (Invitrogen, CA, USA) under control of the hsp70 promoter and terminator and cloned into the pXL-BacII-DHFR (-) that contained the hdhfr and egfp expression cassettes. The promoters and terminators were excised from a Yuda 2 plasmid (obtained from Dr. M. Yuda, Mie University). pXL/hdhfr-bsd-egfp was transected with the transposase expression vector EGF-pgT.
Elements of pBS/bsd were generated into a pBS backbone. The bsd expression cassette was flanked by the hsp70 promoter and terminator.

In addition:
We constructed a targeting vector that contained a bsd expression cassette which replaced the gfp expression cassette of the GFP-expressing mutant (PbDHFR-GFP) through double crossover homologous recombination.
Additional remarks selection procedureWe analyzed the IC50 values for blasticidin of wild type parasites (WT), pyrimethamine resistant pbdhfr-ts marker integrated parasites (PBDHFR), and pXL/hdhfr-bsd-egfp transfected parasites that were selected by pyrimethamine (BSD). The IC50 values were 29.87 ± 12.55 μg ml-1 for WT, 27.13 ± 8.47 μg ml-1 for PBDHFR, and 159.15 ± 103.54 μg ml-1 for BSD. The IC50 value of BSD tended to be increased, as compared with that of WT (p=0.0684) and PBDHFR (p=0.0637). BSD showed significantly decreased susceptibility to blasticidin at the concentrations above the IC70 value compared with WT and PBDHFR (p < 0.05).
Drug sensitivity test described above confirmed that the optimum concentration of blasticidin was 500 μg ml-1 (approximately IC70 value of BSD and 5-fold IC90 value of PBDHFR). The in vitro selection procedure for the pXL/hdhfr-bsd-egfp transfected parasite was performed three times with the 500 μg ml-1 concentration of blasticidin, and the egfp-expressing mutant ratio was monitored after each selection. The ratio was 3.29 ± 1.57, 92.33 ± 1.97, and 94.64 ± 1.98 (Mean ± S.D.) % after each selection, respectively. It took 1-2 days from transfection to 1st selection (parasitemia 1.89 ± 1.53%), 6-7 days from 1st to 2nd selection (parasitemia 1.46 ± 0.23%), and 5 days (parasitemia 0.98 ± 0.51%) from 2nd to 3rd selection.
Two clones were isolated from the mutant parasites population selected in Fig.1C by in vivo limiting dilution method to confirm that bsd was integrated into the genome. Southern blot analysis confirmed that bsd was integrated into the genome.

We constructed a targeting vector that contained a bsd expression cassette which replaced the gfp expression cassette of the GFP-expressing mutant (PbDHFR-GFP) through double crossover homologous recombination. The targeting vector was transfected to PbDHFR-GFP, and the gfp negative mutant ratio was monitored after each in vitro selection. The ratio was 4.74 ± 0.99, 6.88 ± 0.69, and 98.57 ± 2.35 (Mean ± S.D.) % after each selection, respectively. It took 2-3 days from transfection to 1st selection (parasitemia 1.09 ± 0.92%), and 5-6 days from 1st to 2nd selection (parasitemia 1.80 ± 0.86%). Two clones were isolated and Southern blot analysis confirmed that bsd was integrated into the genome. A typical transfection line was also analyzed using flow cytometry. More than 99% of the parasites did not express GFP after the second selection. Therefore, bsd can be used for gene targeting.
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0711900
Gene Model P. falciparum ortholog PF3D7_0818900
Gene productheat shock protein 70
Gene product: Alternative nameHSP70
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0711900
Gene productheat shock protein 70
Gene product: Alternative nameHSP70
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionInsertion locus
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4