RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-598
Malaria parasiteP. berghei
Genotype
DisruptedGene model (rodent): PBANKA_1125100; Gene model (P.falciparum): PF3D7_0626300; Gene product: 3-oxoacyl-acyl-carrier protein synthase I/II (FabB/F)
Phenotype Sporozoite; Liver stage;
Last modified: 27 February 2012, 15:09
  *RMgm-598
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene disruption
Reference (PubMed-PMID number) Reference 1 (PMID number) : 22342550
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA cl15cy1
Other information parent lineA reference wild type clone from the ANKA strain of P. berghei (PubMed: PMID: 17406255).
The mutant parasite was generated by
Name PI/ResearcherT. Annoura; C.J. Janse; S.M. Khan
Name Group/DepartmentLeiden Malaria Research Group
Name InstituteLeiden University Medical Center
CityLeiden
CountryThe Netherlands
Name of the mutant parasite
RMgm numberRMgm-598
Principal name1345cl1
Alternative name∆fabb/f
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNormal numbers of salivary gland sporozoites are formed. Sporozoites have a reduced infectivity to mice as shown by a significant delay of blood infections (prolonged prepatent period) after intravenous inoculation of sporozoites.
Liver stageNormal numbers of salivary gland sporozoites are formed. Sporozoites have a reduced infectivity to mice as shown by a significant delay of blood infections (prolonged prepatent period) after intravenous inoculation of sporozoites.
Sporozoites showed normal cell traversal, hepatocyte invasion rates and initial stages of intrahepatic development. The formation of merozoites within the liver schizonts was affected (see 'Additional information'). Intravenous injection of 50.000 sporozoites resulted in breakthrough blood infections in the majority (80–100%) of BALB/c mice. All C57BL/6 mice developed a blood stage infection when infected with 50.000 sporozoites. The blood infections show a prolonged prepatency period of 1–2 days as compared to WT parasites. Assuming a P. berghei blood stage multiplication rate of 10× per 24 h this delay to patency indicates a 90–99% reduction in the production and/or infectivity of the Δfabb/f exo-erythrocytic merozoites.
Additional remarks phenotype

Mutant/mutation
The mutant lacks expression of FABB/F.

Protein (function)
FABB/F is an enzyme of the bacterial like type II fatty acid biosynthesis (FAS-II) pathway. In Plasmodium FAS-II enzymes have been localized to the apicoplast, a nonphotosynthetic plastid organelle of cyanobacterial origin.
FAS-II requires acetyl-Coenzyme A (CoA), which can be converted from pyruvate by the pyruvate dehydrogenase complex. Acetyl-CoA carboxylase converts acetyl-CoA to malonyl-CoA, which is tethered to an acyl carrier protein (ACP) by malonyl-CoA:ACP transacylase (FabD). This produces malonyl-ACP, which, in conjunction with acetyl-CoA, is acted upon by β-ketoacyl-ACP synthase III (Fab H) to form β-ketoacyl-ACP. This precursor enters the FAS-II elongation cycle, mediated by FabB/F (β-ketoacyl-acyl-carrier-protein (ACP) synthase), FabG (β-ketoacyl-ACP reductase), FabZ/A (β-hydroxyacyl-ACP dehydratase), and FabI (trans-2-enoyl-ACP reductase). These four FAS-II enzymes iteratively catalyze the addition of two carbon chains to a growing fatty acyl carbon chain via condensation, reduction, dehydration, and reduction steps, respectively.

Phenotype
The phenotype analyses show that FABB/F is not essential for blood stage development, mosquito stage development and initial infection of the liver. The results indicate an important (but not essential role) in the formation of infective liver stage merozoites demonstrating the importance of FASII pathway for synthesis of fatty acids during late liver stage development. Intravenous injection of 50.000 sporozoites  resulted in breakthrough blood infections in the majority (80–100%) of BALB/c mice. All C57BL/6 mice developed a blood stage infection when infected with 50.000 sporozoites. The blood infections show a prolonged prepatency period of 1–2 days as compared to WT parasites. Assuming a P. berghei blood stage multiplication rate of 10× per 24 h this delay to patency indicates a 90–99% reduction in the production and/or infectivity of the Δfabb/f exo-erythrocytic merozoites.

Additional information
Liver stages of Δfabb/f developed into mature forms as shown by qRT-PCR analysis and immuno-fluorescence microscopy. During in vitro liver stage development, the Δfabb/f parasites were morphologically similar to WT parasites as judged by immuno-fluorescence microscopy. However, schizonts showed a significantly lower level of expression of the merozoite surface protein 1 (MSP1); at 48 h post infection (hpi) only 18% of the Δfabb/f schizonts strongly expressed MSP1 whereas 39% of WT parasites were MSP1-positive (p < 0.001) and this increased to 54% in WT and 37% in Δfabb/f at 54 hpi (p = 0.01). The normal morphology of maturing Δfabb/f liver stages and expression of MSP1 parasites is different from the phenotype reported for P. yoelii parasites lacking expression of FabB/F (RMgm-183), where schizonts show clear signs of degeneration and absence of MSP1 expression.

Other mutants
RMgm-599: An independent P. berghei mutant lacking expression of FabB/F.
RMgm-183: A P. yoelii mutant lacking expression of FabB/F.
RMgm-180: A P. yoelii mutant expressing myc tagged FABI
RMgm-181: A P. yoelii mutant expressing myc tagged FABZ
RMgm-182: A P. yoelii mutant expressing myc tagged FABG
RMgm-184: A P. yoelii mutant lacking expression of FABz
RMgm-197: A P. berghei mutant lacking expression of FABI


  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1125100
Gene Model P. falciparum ortholog PF3D7_0626300
Gene product3-oxoacyl-acyl-carrier protein synthase I/II
Gene product: Alternative nameFabB/F
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct usedPlasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
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Plasmid/construct sequence
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AGCTTGGGCCCCCGCGGTGGCGGCCGCTCTAGCTTTGATCCCGTTTTTCTTACTTATATA
TTTATACCAATTGATTGTATTTATAACTGTAAAAATGTGTATGTTGTGTGCATATTTTTT
TTTGTGCATGCACATGCATGTAAATAGCTAAAATTATGAACATTTTATTTTTTGTTCAGA
AAAAAAAAACTTTACACACATAAAATGGCTAGTATGAATAGCCATATTTTATATAAATTA
AATCCTATGAATTTATGACCATATTAAAAATTTAGATATTTATGGAACATAATATGTTTG
AAACAATAAGACAAAATTATTATTATTATTATTATTTTTACTGTTATAATTATGTTGTCT
CTTCAATGATTCATAAATAGTTGGACTTGATTTTTAAAATGTTTATAATATGATTAGCAT
AGTTAAATAAAAAAAGTTGAAAAATTAAAAAAAAACATATAAACACAAATGATGTTTTTT
CCTTCAATTTCGATTGATAATTCCTGCAGCCCAGCTTAATTCTTTTCGAGCTCTTTATGC
TTAAGTTTACAATTTAATATTCATACTTTAAGTATTTTTTGTAGTATCCTAGATATTGTG
CTTTAAATGCTCACCCCTCAAAGCACCAGTAATATTTTCATCCACTGAAATACCATTAAA
TTTTCAAAAAAATACTATGCATATAATGTTATACATATAAACATAAAACGCCATGTAAAT
CAAAAAATATATAAAAATATGTATAAAAATAAATATGCACTAAATATAAGCTAATTATGC
ATAAAAATTAAAGTGCCCTTTATTAACTAGTCGGAATTATTTATATTTCTATGTTATAAA
AAAATCCTCATATAATAATATAATTAATATATGTAATGTTTTTTTTATTTTATAATTTTA
ATATAAAATAATATGTAAATTAATTCAAAAAATAAATATAATTGTTGTGAAACAAAAAAC
GTAATTTTTTCATTTGCCTTCAAAATTTAAATTTATTTTAATATTTCCTAAAATATATAT
ACTTTGTGTATAAATATATAAAAATATATATTTGCTTATAAATAAATAAAAAATTTTATA
AAACATAGGGGGATCCATGGTTGGTTCGCTAAACTGCATCGTCGCTGTGTCCCAGAACAT
GGGCATCGGCAAGAACGGGGACCTGCCCTGGCCACCGCTCAGGAACGAATTTAGATATTT
CCAGAGAATGACCACAACCTCTTCAGTAGAAGGTAAACAGAATCTGGTGATTATGGGTAA
GAAGACCTGGTTCTCCATTCCTGAGAAGAATCGACCTTTAAAGGGTAGAATTAATTTAGT
TCTCAGCAGAGAACTCAAGGAACCTCCACAAGGAGCTCATTTTCTTTCCAGAAGTCTAGA
TGATGCCTTAAAACTTACTGAACAACCAGAATTAGCAAATAAAGTAGACATGGTCTGGAT
AGTTGGTGGCAGTTCTGTTTATAAGGAAGCCATGAATCACCCAGGCCATCTTAAACTATT
TGTGACAAGGATCATGCAAGACTTTGAAAGTGACACGTTTTTTCCAGAAATTGATTTGGA
GAAATATAAACTTCTGCCAGAATACCCAGGTGTTCTCTCTGATGTCCAGGAGGAGAAAGG
CATTAAGTACAAATTTGAAGTATATGAGAAGAATGATGCTAGCGGAGGAGGTGGATCTGG
TGGAGGTGGAAGTGCTAGCGTGACAGGGGGAATGGCAAGCAAGTGGGATCAGAAGGGTAT
GGACATTGCCTATGAGGAGGCGGCCTTAGGTTACAAAGAGGGTGGTGTTCCTATTGGCGG
ATGTCTTATCAATAACAAAGACGGAAGTGTTCTCGGTCGTGGTCACAACATGAGATTTCA
AAAGGGATCCGCCACACTACATGGTGAGATCTCCACTTTGGAAAACTGTGGGAGATTAGA
GGGCAAAGTGTACAAAGATACCACTTTGTATACGACGCTGTCTCCATGCGACATGTGTAC
AGGTGCCATCATCATGTATGGTATTCCACGCTGTGTTGTCGGTGAGAACGTTAATTTCAA
AAGTAAGGGCGAGAAATATTTACAAACTAGAGGTCACGAGGTTGTTGTTGTTGACGATGA
GAGGTGTAAAAAGATCATGAAACAATTTATCGATGAAAGACCTCAGGATTGGTTTGAAGA
TATTGGTGAGGCTTCGGAACCATTTAAGAACGTCTACTTGCTACCTCAAACAAACCAATT
GCTGGGTTTGTACACCATCATCAGAAATAAGAATACAACTAGACCTGATTTCATTTTCTA
CTCCGATAGAATCATCAGATTGTTGGTTGAAGAAGGTTTGAACCATCTACCTGTGCAAAA
GCAAATTGTGGAAACTGACACCAACGAAAACTTCGAAGGTGTCTCATTCATGGGTAAAAT
CTGTGGTGTTTCCATTGTCAGAGCTGGTGAATCGATGGAGCAAGGATTAAGAGACTGTTG
TAGGTCTGTGCGTATCGGTAAAATTTTAATTCAAAGGGACGAGGAGACTGCTTTACCAAA
GTTATTCTACGAAAAATTACCAGAGGATATATCTGAAAGGTATGTCTTCCTATTAGACCC
AATGCTGGCCACCGGTGGTAGTGCTATCATGGCTACAGAAGTCTTGATTAAGAGAGGTGT
TAAGCCAGAGAGAATTTACTTCTTAAACCTAATCTGTAGTAAGGAAGGGATTGAAAAATA
CCATGCCGCCTTCCCAGAGGTCAGAATTGTTACTGGTGCCCTCGACAGAGGTCTAGATGA
AAACAAGTATCTAGTTCCAGGGTTGGGTGACTTTGGTGACAGATACTACTGTGTTTAACT
CGATCCCGTTTTTCTTACTTATATATTTATACCAATTGATTGTATTTATAACTGTAAAAA
TGTGTATGTTGTGTGCATATTTTTTTTTGTGCATGCACATGCATGTAAATAGCTAAAATT
ATGAACATTTTATTTTTTGTTCAGAAAAAAAAAACTTTACACACATAAAATGGCTAGTAT
GAATAGCCATATTTTATATAAATTAAATCCTATGAATTTATGACCATATTAAAAATTTAG
ATATTTATGGAACATAATATGTTTGAAACAATAAGACAAAATTATTATTATTATTATTAT
TTTTACTGTTATAATTATGTTGTCTCTTCAATGATTCATAAATAGTTGGACTTGATTTTT
AAAATGTTTATAATATGATTAGCATAGTTAAATAAAAAAAGTTGAAAAATTAAAAAAAAA
CATATAAACACAAATGATGTTTTTTCCTTCAATTTCGATGGGTACGTACCCTCGAGGCTA
GCGATATCGAATTCATTTATTAGTTGATATTATTATTTATATAGTTTATAAGTGATTTCT
TTATAACTTTTTTTCATGGCATCTTTCTCGCACACTTGCGTATATGCACATATATGTACA
CACTCATGTATGGATATCCAAATTTTTAACAAATCACAAAAATTATGGAATATTATATGT
TGATTTTTATTAAATATTAATATAATAGGGTATATAACATTTCCTCACATTTTAAAATGG
TGTATATTTTTCCACGTCAGCAGTTATACATATACTATATTCCTAAAACTAATTGGATTA
ATTATCGACTTTTTCATTATTTTTTTAATATTCTTTACTAAAAAAAAATATGTTTTTATA
TAAATTTTAATTAAGCGGTTCGGCATTAAAAAAAATATATCAGTTGTAGGGGAAATTGCA
ACTACTATTTAATGTATCTTTGCTATTTATATTTTCGATAAAAATAACTATTAAAATTTA
AATTTATTATAATATCCATTTTTTCTTACATTTAATCGATATACCATTATTATTTTTTAT
TTATAACTGTTTTCTCTCAATTTTTGCAACGACATAATTTTCTATGTTTTTTTTATTTAT
TTATATTTATCGAAGGGAGCTACAAAATTGGGGCAATTTCTTCTATTTGATTGTAGTATA
TTGCTGGGGAATATATATTTACATGCTTACTTTATTATATATATTTTTTTTTTTTTTCCT
TATTAATTTACCATTTATATGAGATATACATATAAACCCGGGGGATCCACTAGTTCTAGA
GCGGCCGCCACCGCGGTGGAGCTCCAATTCGCCCTATAGTGAGTCGTATTACAATTCACT
GGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCT
TGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCC
TTCCCAACAGTTGCGCAGCCTGAATGGCGAATGGGACGCGCCCTGTAGCGGCGCATTAAG
CGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCC
CGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCGCCGGCTTTCCCCGTCAAGC
TCTAAATCGGGGGCTCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTCGACCCCAA
AAAACTTGATTAGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCG
CCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAAC
ACTCAACCCTATCTCGGTCTATTCTTTTGATTTATAAGGGATTTTGCCGATTTCGGCCTA
TTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCGAATTTTAACAAAATATTAAC
GCTTACAATTTAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTATTT
TTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAA
TAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTT
TTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGAT
GCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAG
ATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTG
CTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATA
CACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGAT
GGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCC
AACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATG
GGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCAAAC
GACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACT
GGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGATAAA
GTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAATCT
GGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAGCCC
TCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAATAGA
CAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAGTTTAC
TCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGGTGAAG
ATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCG
TCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCGTAATC
TGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAG
CTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTC
CTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTACATAC
CTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACC
GGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGT
TCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTACAGCGT
GAGCTATGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGC
GGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTT
TATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCA
GGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTT
TGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGT
ATTACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCAGCGAG
TCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGCGTTGG
CCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTGAGCGC
AACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTATGCTT
CCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACAGCTAT
GACCATGATTACGCCAAGCTCGAAATTAACCCTCACTAAAGGGAACAAAAGCTGGTACCA
CATAAATTTGTACAAAACTTAAATGATCTATATCCCCTGTGTTTTCTACACTATATATAT
ATACTTGTTTTAAAAATAACCCTTTGTATTAAAAAGCAACATATATGACATATTTTTATT
TTTATACATGTATCTGAAATTTGTTGATTTAAAAGCAAAAAAAAATTATATTTTCTTTTG
TATAAAAAAATATTCATTTTACTACATATAAACAAAGTTGTGAATATAAAAGACCCCAAT
ATGCATATGTGTGGTTGTAGAACAACACTATTTAATCCTATAGTTGTGTGTGTTGTAAAT
ACTTAGAAGTAGCACGCATATGGGAATATAGGATATGTGATATTAGAATAATATAGTTTT
TTGTTAAGAAAGAAATCATTTTTATTTATACCTTAATGATAATTTTATAATTTTTTTTTC
TATTTTACCTCTTTTAATCTTTTTTAATATACATGCTTATGTTTCTATTGTAAAAACATC
ATCAGGTGTATAGCAAAAAATACGGATTTATCAAGAATAATGCTCAAAGAACTAAAAAAA
ATACATTCAGGAATTTAAGTCTATACACCACTTACAATGCAAATGAATTAAAAAAATATT
GCGAAGTAAGATATTAATATAAAAAATATGTTATGTTTTAAACCATATTGTATATATGCA
GTATTTTCTTAATCAAATAAGTGGCATATCATTTATGCATATTTTTACGTATATATGTGT
ATAGGTCTACATAAATTAATTTAAATAAGCATAAGTATAAAGTGTGTGAAATAAATACAT
ATCA
Restriction sites to linearize plasmid
Partial or complete disruption of the genePartial
Additional remarks partial/complete disruption Of the FabB/F coding region, the first 828 bp remain intact
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modification
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1GCGCGGTACCACATAAATTTGTACAAAACTTAAATGA
Additional information primer 1L4194 (KpnI); 5' target region
Sequence Primer 2GCGCGGATCCGATATGTATTTATTTCACACACTTTAT
Additional information primer 2L4195 (BamHI); 5' target region
Sequence Primer 3GCGCGAATTCATTTATTAGTTGATATTATTATTTATA
Additional information primer 3L4196 (EcoRI); 3' target region
Sequence Primer 4GCGCCCCGGGTTTATATGTATATCTCATATAAATGGT
Additional information primer 4L4197 (XmaI); 3' target region
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6