RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-4429
Malaria parasiteP. berghei
Genotype
MutatedGene model (rodent): PBANKA_1101500; Gene model (P.falciparum): PF3D7_0501700; Gene product: anaphase-promoting complex subunit 3, putative (APC3)
Details mutation: 'Promoter swap' mutant: the promoter of APC3 replaced by the promoter of ama1 (PBANKA_0915000)
Transgene
Transgene not Plasmodium: GFP (gfp-mu3)
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Phenotype Gametocyte/Gamete; Fertilization and ookinete; Oocyst;
Last modified: 9 April 2018, 18:17
  *RMgm-4429
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene mutation, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 29618731
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA 507cl1 (RMgm-7)
Other information parent lineP.berghei ANKA 507cl1 (RMgm-7) is a reference ANKA mutant line which expresses GFP under control of a constitutive promoter. This reference line does not contain a drug-selectable marker (PubMed: PMID: 16242190).
The mutant parasite was generated by
Name PI/ResearcherWall RJ, Tewari R
Name Group/DepartmentSchool of Life Sciences, Queens Medical Centre
Name InstituteUniversity of Nottingham
CityNottingham
CountryUK
Name of the mutant parasite
RMgm numberRMgm-4429
Principal nameP(ama1)apc3
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNo male gamete formation: in vitro activation of microgametocytes did not result in microgametogenesis as microgamete formation and exflagellation were not observed.
Normal DNA replication in activated male gametocytes (up to the octoploid value). Normal axoneme formation.
Female gametes are fertile (as shown in crossing-experiments).
Fertilization and ookineteNo male gamete formation, no fertilisation, no ookinetes, no oocysts. Female gametes are fertile (as shown in crossing-experiments).
OocystNo male gamete formation, no fertilisation, no ookinetes, no oocysts
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
In the promoter swap' mutant: the promoter of the endogenous apc3 gene is replaced by the promoter of ama1 (PBANKA_0915000). In addition the mutant expresses GFP under the constitutive eef1a promoter.

Protein (function)
One essential component that drives the cell cycle, and particularly mitosis, in many eukaryotic systems is the Anaphase Promoting Complex/Cyclosome (APC/C). The APC/C is a multi-subunit E3 ubiquitin ligase that promotes cell-cycle progression by covalently tagging regulators such as securin and cyclin B1 with ubiquitin leading to their proteolysis by the proteasome. The mammalian APC/C has 14 core components, and several key adaptor subunits, including cell division cycle protein 20 (CDC20) and the related CDH1. Intriguingly, only four APC/C components have been identified as coded by the Plasmodium genome: APC10, APC11 and APC3 (a tetratricopeptide repeat [TPR] containing subunit), along with CDC20.
During the Plasmodium life cycle, there are two atypical mitotic processes: one that resembles endomitosis occurs during asexual multiplication, for example, during blood stage schizogony, and another that occurs during the sexual stage - the formation of microgametes (male progenitor sex cells) in the mosquito midgut. During schizogony, genome duplication and segregation proceed via the formation of an intra-nuclear spindle without disintegration of the nuclear membrane, resulting in a multinucleated syncytium called a schizont. In microgametogenesis, exposure of the male gametocyte to mosquito midgut factors results in ‘activation’ of the microgametocyte, which undergoes three rounds of rapid genome duplication from haploid to octaploid, followed by simultaneous chromatin condensation and nuclear budding. Each condensed haploid nucleus and associated MTOC, together with a basal body, axoneme and flagellum, is incorporated into the microgamete, which egresses from the main cellular body in a process termed exflagellation.

Phenotype
APC3 is essential for blood stage development/multiplication (see RMgm-4430 for unsuccessful attempts to disrupt the apc3 gene). In the 'promoter-swap' mutant the promoter of apc3 is replaced by an 'asexual blood stage’ promoter that is silent (or has a strongly reduced activity) in gametocytes (the promoter of ama1, PBANKA_0915000).

The mutant shows the following phenotype: Normal blood stage development/multiplication. No male gamete formation: in vitro activation of microgametocytes did not result in microgametogenesis as microgamete formation and exflagellation were not observed. Normal DNA replication in activated male gametocytes (up to the octoploid value). Normal axoneme formation. Female gametes are fertile (as shown in crossing-experiments).

Additional information
Evidence is presented that that APC3 is associated with the MTOC-like centriolar plaque during schizogony and male gametogenesis, but is not associated with the other APC/C components. However, it is required for chromosome condensation and cytokinesis, but not DNA replication, during microgamete formation.

Other mutants
see RMgm-4430 for unsuccessful attempts to disrupt the apc3 gene


  Mutated: Mutant parasite with a mutated gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1101500
Gene Model P. falciparum ortholog PF3D7_0501700
Gene productanaphase-promoting complex subunit 3, putative
Gene product: Alternative nameAPC3
Details of the genetic modification
Short description of the mutation'Promoter swap' mutant: the promoter of APC3 replaced by the promoter of ama1 (PBANKA_0915000)
Inducable system usedNo
Short description of the conditional mutagenesisNot available
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationSee mutant RMgm-774 for the 'promoter-swap' mutant construct used
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP (gfp-mu3)
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitegfp (FACS)
Promoter of the selectable markereef1a
Selection (positive) procedureFACS (flowsorting)
Selection (negative) procedureNo
Additional remarks genetic modification
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4